Instructors

Joseph Hughes (Course Organizer)
Derek Wright (Co-organizer)
Quan Gu
Srikeerthana Kuchi
Richard Orton
David Robertson
Sreenu Vattipally

Timetable

Practical Modules

1. Login, setup & basic Linux
2. NGS/HTS data
3. Quality control and read cleaning
4. Reference alignment
5. Bash file editing & text processing
6. Bash conditions & loops
7. Introduction to MSA and phylogenetics
8. De novo assembly
9. De novo quality assessment
10. Introduction to plotting in R
11. Metagenomics and virus discovery or Alignment for transcriptomics and DE analysis
12. K-mer based metagenomics or Gene ontology and pathway analysis in R